mirror of
https://github.com/kidwellj/mapping_environmental_action.git
synced 2024-10-31 23:42:20 +00:00
18 lines
720 B
Bash
18 lines
720 B
Bash
#!/bin/bash
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#SBATCH --mail-type ALL
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#SBATCH --cpus-per-task 1
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#SBATCH --time 180:0
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#SBATCH --ntasks 20
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#SBATCH --qos bbdefault
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module purge; module load bluebear
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module load R/3.5.0-iomkl-2018a-X11-20180131
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module load Pandoc/2.3.1
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module load plotly/4.7.1-iomkl-2018a-R-3.5.0
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module load rgeos/0.3-28-iomkl-2018a-R-3.5.0
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module load tmap/2.2-iomkl-2018a-R-3.5.0
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Rscript -e 'library(rmarkdown); rmarkdown::render("mapping_draft-hpc_optimised.Rmd", "html_document")'
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cp mapping_draft.html /rds/projects/2016/kidwellj-01/mapping_environmental_action/
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cp figures/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/figures
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cp derivedData/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/derivedData |