From fcb586bac40206762dbb2a548a01f0a7898e8b87 Mon Sep 17 00:00:00 2001
From: Jeremy Kidwell <bots@jeremykidwell.info>
Date: Mon, 25 Mar 2019 19:19:56 +0000
Subject: [PATCH] minor tweaks to htpc setup

---
 data/poi_2015_12_scot06340459.csv |  0
 sbatch.sh                         | 15 +++++++++++++++
 2 files changed, 15 insertions(+)
 mode change 100755 => 100644 data/poi_2015_12_scot06340459.csv
 create mode 100644 sbatch.sh

diff --git a/data/poi_2015_12_scot06340459.csv b/data/poi_2015_12_scot06340459.csv
old mode 100755
new mode 100644
diff --git a/sbatch.sh b/sbatch.sh
new file mode 100644
index 0000000..21c89a6
--- /dev/null
+++ b/sbatch.sh
@@ -0,0 +1,15 @@
+#!/bin/bash
+#SBATCH --mail-type ALL
+#SBATCH --cpus-per-task 1
+#SBATCH --time 60:0
+#SBATCH --ntasks 20
+#SBATCH --qos bbdefault
+
+module purge; module load bluebear
+module load R/3.5.0-iomkl-2018a-X11-20180131
+module load Pandoc/2.3.1
+module load plotly/4.7.1-iomkl-2018a-R-3.5.0
+module load rgeos/0.3-28-iomkl-2018a-R-3.5.0
+module load tmap/2.2-iomkl-2018a-R-3.5.0
+
+Rscript -e 'library(rmarkdown); rmarkdown::render("mapping_draft-hpc_optimised.Rmd", "html_document")'