diff --git a/data/poi_2015_12_scot06340459.csv b/data/poi_2015_12_scot06340459.csv old mode 100755 new mode 100644 diff --git a/sbatch.sh b/sbatch.sh new file mode 100644 index 0000000..21c89a6 --- /dev/null +++ b/sbatch.sh @@ -0,0 +1,15 @@ +#!/bin/bash +#SBATCH --mail-type ALL +#SBATCH --cpus-per-task 1 +#SBATCH --time 60:0 +#SBATCH --ntasks 20 +#SBATCH --qos bbdefault + +module purge; module load bluebear +module load R/3.5.0-iomkl-2018a-X11-20180131 +module load Pandoc/2.3.1 +module load plotly/4.7.1-iomkl-2018a-R-3.5.0 +module load rgeos/0.3-28-iomkl-2018a-R-3.5.0 +module load tmap/2.2-iomkl-2018a-R-3.5.0 + +Rscript -e 'library(rmarkdown); rmarkdown::render("mapping_draft-hpc_optimised.Rmd", "html_document")'