From 6a90c64a316109bb0cf68e89aecd602bc6d0000e Mon Sep 17 00:00:00 2001 From: Jeremy Kidwell Date: Wed, 27 Mar 2019 12:34:54 +0000 Subject: [PATCH] added qgis viz and additional sbatch --- sbatch_wild.sh | 18 ++++++++++++++++++ wilderness_layers.qgz | Bin 0 -> 10424 bytes 2 files changed, 18 insertions(+) create mode 100644 sbatch_wild.sh create mode 100644 wilderness_layers.qgz diff --git a/sbatch_wild.sh b/sbatch_wild.sh new file mode 100644 index 0000000..58b2511 --- /dev/null +++ b/sbatch_wild.sh @@ -0,0 +1,18 @@ +#!/bin/bash +#SBATCH --mail-type ALL +#SBATCH --cpus-per-task 1 +#SBATCH --time 180:0 +#SBATCH --ntasks 20 +#SBATCH --qos bbdefault + +module purge; module load bluebear +module load R/3.5.0-iomkl-2018a-X11-20180131 +module load Pandoc/2.3.1 +module load plotly/4.7.1-iomkl-2018a-R-3.5.0 +module load rgeos/0.3-28-iomkl-2018a-R-3.5.0 +module load tmap/2.2-iomkl-2018a-R-3.5.0 + +Rscript -e 'library(rmarkdown); rmarkdown::render("mapping_draft-hpc_optimised_wilderness.Rmd", "html_document")' +# cp mapping_draft.html /rds/projects/2016/kidwellj-01/mapping_environmental_action/ +# cp figures/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/figures +# cp derivedData/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/derivedData diff --git a/wilderness_layers.qgz b/wilderness_layers.qgz new file mode 100644 index 0000000000000000000000000000000000000000..d6878363b2f9455ad0c1acfacbed7efd6b56a27c GIT binary patch literal 10424 zcmZ{qbyOWNwy$xD7k77ech>_H*J1}NR@~hk4lYHCYw_X~*MqyeyF0IQ*UY`|y_uV2 z{gUkL?BuUxt>jZxgoeR_fPnY}!4C9R-iCVvH_<{sEZssvVE?tcTiXK7o$Sq>osDcw zJk6b)SsX2$&wOp1R|G)!2jE|mUKMT@JWWyo50$6PgKkdkHiP_$oRKy*Nc~7aXNgEX zP~FbW{L2O|ghQT`LZKC7D%!YGKgH5ovnwyb=FH}0uF5avY6p?ryZ49rXs_I^&MrRD zqqjYlILiyTVEIEnU)pr!!`@E9HvgkHa~IB5k+#>-sVwrH^w4h68cdZc1d-L1leHbT z>!72poYin&k4uqs<%hWSTd&?W;~-J}D?%t3J?y_q2= zQ;JgAk5$YmwUNLJW`FzsN38g&7SfL&23uB<45$ZR+Ff|7PUP{X6rCt3Qm&Xp`*sf5 zJJLY(vJOYNy&gf5B@gqzO{s_(Xr8c@hJQgXdcW+b9%mJo$wM5AU39$3(^EYgU7S%C zK_0>0zv;SId2X3q*bxb>%7i(U(&-s}iFt#Dm=jUG^VJOWm0w94f_;K#5O`Wp-F$~k zevT4H%u(s!6Ue?@SBBmNA)>*{3)kz(7VfN3mJU6CPk3d?nS^g;k-tTF2)Ml?ZV`GB zdVXZ_%~>CzGa%y6=PjUgbm4w}?1Wd+JwfrhkYv68*|ts_EmHToE=%Fgw>kW@-e=3i zOp9C`pF}xdB7ZlE#(^_!vd)Ak#Op2gV$Y}3`eSNidy}WZ!aaxczG|hQc2CxWPp3I6 z=F!-C=q9T08~bgQED=c``2hTH6Smx*6$Rb<0wL9?6?w4Yk_FmCe@%cknm$Ti_ z(@=&SlYN=sLr$TNhlp=Vmt0Lg$sP%X(eg+%sggtkLVXc#{gCXxIx*KiWMBDu!*>U} z^pcjkK3+FXHiTctSxAzi3Ej3rrc6xePPNJv4hoq?(MrUf9PDNJSk}C1Ob^bXtw~xE zkq^|&6GD(f0P2uo#gw)>W`$z9;>9P+LzBq*n$&@Y4W;Afj$A_^ux$c_>`9T=5gyjY%sVhc!m zcaijV;}CfC5D{qpM8wlCC3mh!h*C)*S+&v(Y9&*{?VAh5t2|rAfeVW=$b%?s1_jwl zyMCSrAT$d!D6NdiG}dwZx3asMF-nYt^*+MfXC$kHDN|TjR`6snT`h`5K?8s$`V!?r zVXcL2QNTdk!#aho_9=znaEAlj65PRD<*CEnghL$b6(Wg8rD-AJFB>MCLL)7ckQv(W_5$;gf-D zBboxP@RoEqA~^#=B6PEAjMH1M5DedCiPJHqP80x;#;9d8v!QhT5O)>kNVSTW#At#{`*D=iV;WgW1rT`iR zPloiku8?6efvQvznht0IRNE`Fn z(VQ^qh4AYihJF&)hqZ@LBu1YHvR}5H0gUB0ufDo(1Dj9Yb&AIK7%#Q_{MNm&m!wfj*F}rJJ}IDw#vNL*TB#IdMtT__PCu zE8@?eDhirZpq@|^yQ=eBf6q0hX6k@#R zl&bO5k`BC3X-%kCt*5KL!lYmJ^qQ$zp=y-hDd8LXjCl8keVo-4-A|fhVKzHd41YxZYIir)UaAn_A$f~0f-@r&LH%&!QvLWcL<)0 zzMzR=XjA-+4NCotB>z;XHnp%0lcvMsEYag?DSf)#fo+n8-+JJEwFA!)MNKBVRLR*3 zH#v#iV!QT)goXkkf06ZPR_Q+10t0%=c|W-iFDUNH~@+& z_S3>$$RZn;E-&5p-9&fNU|0t!a23*eprTfdDPuQ0F*}vn2er6-ICQm_Zmj?2U^tlz zYkLH#Oy-tEk}0UmvrF?cEi25ClB34b2o`$xr)DAab!;u~^)=u4hG)R^h`T&^okn=- zr4VI<&hA>dY)`)^lRs!}f8Ta{FrC9_d+}#ExYipe3}~;BozI&UyFs%5)*#`PR-)h9 z&)ivcbe7$GLs>p?G_g(JXqqV@^YPssmvgiZy{Uk&Av;}Y#2-iHhcQ9gd4l(tR~Ynq z#Nr!Sdt>oBsk{d#Q8J5SFA-JSeM9V$%KMY=CjZ##lF|EcdNZJI;J}xe_#<-fY1i*M z%^w4Zk#@6D#GI!t9g|RwagFHsiq>K#ye~*EGIbwiMs%nV>}#+wZ`hXN>UY& z-0X`N5lPok-$v@q;Y2ID88g2YOhXb{Vk}5bSW&D*A2*MFr*bUC7Wu0B6OtEwQX0~v zExf}~tW~7pXS)58g6<`8;`;s7p`$6hUl^NdDM0W`eT1;d#S*1RPtkHO2{Rvo8*7Si zZ4YTW-2MCMIK`N6s1;wWG!{JF6bgTtjeUNx_#JUcz=u~Cg z>fr|Y`1*=-H%krr_^dO=0u79%#H=o#AgN0Xn}XDqRrCmA2C2>s#pynLWUcBy9EG^d zKTQRoO1rewOZ4qgPsr$MxngnM2P!{vUo0DwB;lhKxEd;9hVosz`u4lT7WiMTK31E{ zURIvH6!diz>l;j%eij%QMikq9X8EpdZ7p&77P!J4?bKk8Vy4I26my+pA;EV72q-E; zSCM@ll9q<+ry$O6H_aD6R%5AJTIT>$%v}`lQTZ`DGmq(c*$$`vuvZ<-g>t%nt}L!* zid`R5bS}LBZYiV`Zf%xRoSS%y09t7cC0Jl+$Dq@2kfZ$sHeh#ql?3{f2;p8seyET( z^0V#%xV>&_AA&7LHX~yVaoaY89&iTH5nK;k%;?Y3)i&$?cshiVxbEl5`OBajf`Vxt zpX#bXk`ltMtk7w88Q8c_S%bUM2i`f~j=s{5HD~I^;fj(3y0F!q#8~z1FJLkb{1$)o zIM$^q&-RgjN$Cqbea<|Zav&+=>Y(DZP|_I58GH+XH+?Y(Z$GCEV5m%Eez0+m!em4wy>!ATGe zmxmh^Zk^JZc8A>dHQQsS0ahbpdHMMMUX&&2b27yXCure&$_w?qq?|~G-BhNTaip68$qn4!ZCFv$ zZiB7$)hTplbcD^{>WM^m-jI8d2I$|e>h^w#>&KrzCsf+PM(OEW*;4#$FX%6_+x z0il(+2$C8~1L!a!k zCFuy?Cq z(U5(j)t)?db!+;`bQ}6dhq2-Cm)MMEh%WXC3Av4Q2l5DqvENuty!%YB$IQ(m`JQd# zFoc(XP&{@~Jd*WD)}0tDUD9{FL7a<>sUL&Gv~GCg^rP&6TG$U2g%82fN7|Q*k2E)? 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