diff --git a/sbatch_wild.sh b/sbatch_wild.sh new file mode 100644 index 0000000..58b2511 --- /dev/null +++ b/sbatch_wild.sh @@ -0,0 +1,18 @@ +#!/bin/bash +#SBATCH --mail-type ALL +#SBATCH --cpus-per-task 1 +#SBATCH --time 180:0 +#SBATCH --ntasks 20 +#SBATCH --qos bbdefault + +module purge; module load bluebear +module load R/3.5.0-iomkl-2018a-X11-20180131 +module load Pandoc/2.3.1 +module load plotly/4.7.1-iomkl-2018a-R-3.5.0 +module load rgeos/0.3-28-iomkl-2018a-R-3.5.0 +module load tmap/2.2-iomkl-2018a-R-3.5.0 + +Rscript -e 'library(rmarkdown); rmarkdown::render("mapping_draft-hpc_optimised_wilderness.Rmd", "html_document")' +# cp mapping_draft.html /rds/projects/2016/kidwellj-01/mapping_environmental_action/ +# cp figures/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/figures +# cp derivedData/* /rds/projects/2016/kidwellj-01/mapping_environmental_action/derivedData diff --git a/wilderness_layers.qgz b/wilderness_layers.qgz new file mode 100644 index 0000000..d687836 Binary files /dev/null and b/wilderness_layers.qgz differ